Important: check licenses before you adopt
Anytype is source available under the Any Source Available License 1.0, not standard open source. AppFlowy and Docmost are AGPL-3.0 with commercial or enterprise terms around hosted and enterprise features, and Notesnook splits GPL-3.0 clients from an AGPL-3.0 sync server. Joplin, SiYuan, Tolaria, Blinko, Darkwrite, OpenNotas, and Macro Docs are open source, and SilverBullet and Beaver Notes are MIT.
Closest to Logseq's workflow
SiYuan is the nearest personal knowledge system, with block-level references, bidirectional links, databases, and spaced repetition. SilverBullet turns Markdown into a queryable, scriptable knowledge base with wiki-style links and Lua. Tolaria and Beaver Notes keep plain Markdown-style files or local storage, and AppFlowy and Anytype offer block-based workspaces with databases and graph views.
Privacy and encryption
Notesnook uses zero-knowledge end-to-end encryption, Joplin offers end-to-end encryption and sync through Joplin Cloud or your own storage, and OpenNotas and Justnote focus on encrypted sync. Anytype syncs peer to peer, and Beaver Notes and Darkwrite are offline-first.
Team wikis and collaboration
Docmost and XWiki are team wikis with permissions, real-time collaboration, and SSO, and Macro Docs adds real-time Markdown editing with task and email integration. AppFlowy supports collaboration and self-hosting. Orgnise is a project management platform rather than a notes app.
Maintenance status
Orgnise has had no commits since July 2025 and Justnote since February 2026, and OpenNotas, Darkwrite, and Justnote are small projects, so check that they fit before committing to them. Joplin, SiYuan, AppFlowy, Docmost, Notesnook, Anytype, and SilverBullet were updated within weeks of this update.